Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2010591 chr14:78367380 T/C 0.000168 119 24.17 50.13 37.63 KM Plot
THYM rs201065771 chr9:97131497 G/T 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs201144439 chr2:30673288 C/CTT 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs201170677 chr9:97161113 T/G 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs2012178 chr12:5101640 G/T 9.15E-7 119 11.58 38.13 46.07 KM Plot
THYM rs201306649 chr4:70252839 T/G 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs201316228 chr3:9859107 C/CA 3.33E-15 114 37.27 54.27 15.92 KM Plot
THYM rs201489919 chr2:30673290 C/A 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs201509415 chr9:97095226 C/T 8.53E-5 118 41.77 42.73 17.03 KM Plot
THYM rs201540932 chr7:29684782 TAC/T 4.22E-13 119 38.23 46.07 6 KM Plot
THYM rs201568369 chr6:163045742 TC/T 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs201672749 chr5:149859789 G/GA 2.09E-8 116 41.22 35.13 12.63 KM Plot
THYM rs201733940 chr9:97194001 A/G 8.1E-5 119 41.77 42 17.03 KM Plot
THYM rs201735947 chr11:125574365 AC/A 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs201736052 chr9:97186224 CT/C 8.1E-5 119 41.77 42 17.03 KM Plot